STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ComBFimbrial assembly protein PilN; Pfam: PF05137. (168 aa)    
Predicted Functional Partners:
comA
Putative competence protein A.
  
 
 0.970
pilQ
Type IV pilus secretin PilQ; COG: COG4796; Pfam: PF03958,PF00263; InterPro: IPR013355.
  
 
 0.956
pilB
Type II/IV secretion system protein; COG: COG2804; Pfam: PF05157,PF00437; InterPro: IPR001482.
  
 
 0.720
ComD
Hypothetical protein.
     
 0.701
ComC
Hypothetical protein.
       0.687
pilC
Bacterial type II secretion system domain protein F; Pfam: PF00482; InterPro: IPR001992.
   
 
 0.643
mrcA
Penicillin-binding protein, 1A family; COG: COG5009; Pfam: PF00912,PF00905; InterPro: IPR011816.
       0.525
xkdP
LysM domain protein; COG: COG1652; Pfam: PF04972,PF01476; InterPro: IPR002482.
    
   0.457
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.426
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
  
    0.416
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.