STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YgiWPutative TIGR00156 family protein; COG: COG3111; Pfam: PF04076; InterPro: IPR005220. (123 aa)    
Predicted Functional Partners:
yfbU
YfbU domain protein; COG: COG3013; Pfam: PF03887; InterPro: IPR005587; Belongs to the UPF0304 family.
  
     0.722
tex
ASCH domain protein; COG: COG3097; Pfam: PF06164; InterPro: IPR008314; Belongs to the UPF0267 family.
  
    0.614
torD2
Cytoplasmic chaperone TorD; Involved in the biogenesis of TorA. Acts on TorA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; Belongs to the TorD/DmsD family. TorD subfamily.
  
     0.559
wzzE
Putative lipopolysaccharide biosynthesis protein WzzE.
  
     0.529
YchN
DsrE/DsrF-like family protein; COG: COG1553; Pfam: PF02635; InterPro: IPR003787.
  
     0.515
nrfB
Cytochrome c nitrite reductase, pentaheme subunit.
  
     0.509
YecM
YecM protein; COG: COG3102; Pfam: PF06185; InterPro: IPR010393.
  
     0.503
nrfD
Cytochrome c nitrite reductase, NrfD subunit; COG: COG3301; Pfam: PF03916; InterPro: IPR005614.
  
     0.484
ArfA
Hypothetical protein; COG: COG3036; Pfam: PF03889; InterPro: IPR005589.
  
     0.476
tnaB2
Aromatic amino acid transport protein; COG: COG0814; Pfam: PF03222; InterPro: IPR002091.
  
     0.463
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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