STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX51325.1Hypothetical protein. (350 aa)    
Predicted Functional Partners:
LosA
LPS glycosyltransferase; Pfam: PF01755; InterPro: IPR002654.
 
   
 0.830
waaQ
Heptosyltransferase; COG: COG0859; Pfam: PF01075.
  
   
 0.696
rpmE
Ribosomal protein L31; Binds the 23S rRNA.
 
  
 0.644
VirK
Hypothetical protein; COG: COG2990; Pfam: PF04393; InterPro: IPR007488.
  
     0.587
malM
Maltose operon periplasmic protein precursor (MalM); Pfam: PF07148; InterPro: IPR010794.
  
     0.522
lgtB
acto-N-neotetraose biosynthesis glycosyltransferase LgtB; COG: COG3306; Pfam: PF01755; InterPro: IPR002654.
 
   
 0.482
rfaF
Lipopolysaccharide heptosyltransferase II; COG: COG0859; Pfam: PF01075; InterPro: IPR011910.
 
  
 0.474
EEX50244.1
TIGR01619 family protein; Pfam: PF05117,PF06877; InterPro: IPR006506.
  
     0.441
EEX49654.1
Hypothetical protein.
  
     0.427
GspA_1
Glycosyltransferase, family 8; COG: COG1442; Pfam: PF01501; InterPro: IPR002495.
  
  
 0.412
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.