STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lgtBacto-N-neotetraose biosynthesis glycosyltransferase LgtB; COG: COG3306; Pfam: PF01755; InterPro: IPR002654. (284 aa)    
Predicted Functional Partners:
LosA
LPS glycosyltransferase; Pfam: PF01755; InterPro: IPR002654.
 
     0.794
EEX49945.1
LPS glycosyltransferase; Pfam: PF01755; InterPro: IPR002654.
  
     0.752
EEX49394.1
Tetratricopeptide repeat protein; Pfam: PF04575; InterPro: IPR007655.
  
     0.741
lgtA
Glycosyltransferase, group 2 family protein; COG: COG0463; Pfam: PF00535; InterPro: IPR001173.
       0.738
EEX49832.1
Hypothetical protein.
  
     0.724
EEX50379.1
Hypothetical protein; COG: COG2990; Pfam: PF04393; InterPro: IPR007488.
  
     0.700
VirK
Hypothetical protein; COG: COG2990; Pfam: PF04393; InterPro: IPR007488.
  
     0.690
Hsf2_3
YadA-like domain protein; COG: COG5295; Pfam: PF05662,PF03895; InterPro: IPR005594.
  
     0.665
TdhA
TonB-dependent siderophore receptor; Pfam: PF07715,PF00593; InterPro: IPR010105.
  
     0.631
Hsf2_4
Putative phage prohead protease, HK97 family; COG: COG5295; Pfam: PF05658,PF05662,PF03895; InterPro: IPR005594.
  
     0.624
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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