Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EEX51396.1Outer membrane autotransporter barrel domain protein; Pfam: PF03797; InterPro: IPR006315. (1017 aa)    
Predicted Functional Partners:
est
Autotransporter beta-domain protein; Pfam: PF00657,PF03797; InterPro: IPR005546.
  
   
 0.886
tonB2
TonB-dependent receptor; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.754
Cya_1
Type I secretion target GGXGXDXXX repeat (2 copies); Pfam: PF00353.
  
  
 0.753
fhaC
POTRA domain protein, ShlB-type; COG: COG2831; Pfam: PF08479; InterPro: IPR013686.
 
  
 0.741
lspB
POTRA domain protein, ShlB-type; Pfam: PF08479,PF03865.
 
  
 0.725
EEX49684.1
Hypothetical protein; COG: COG3220; Pfam: PF05114; InterPro: IPR007801; Belongs to the UPF0276 family.
   
    0.670
arcB
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG0642; Pfam: PF00512,PF02518,PF00072,PF01627; InterPro: IPR003594.
  
  
 0.623
EEX50555.1
Hypothetical protein.
  
 
 0.621
EEX49574.1
Hypothetical protein.
  
 
 0.621
prc
Peptidase, S41 family; COG: COG0793; Pfam: PF00595,PF03572; InterPro: IPR004447; Belongs to the peptidase S41A family.
 
   
 0.613
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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