STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UlaAPTS system, Lactose/Cellobiose specific IIB subunit; COG: COG3037; Pfam: PF04215,PF02302; InterPro: IPR007333. (597 aa)    
Predicted Functional Partners:
ptsN2
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; COG: COG1762; Pfam: PF00359; InterPro: IPR002178.
 
 
 0.995
UlaG
Hypothetical protein; COG: COG2220.
 
 
 0.991
pyrF
Orotidine 5'-phosphate decarboxylase/HUMPS family; COG: COG0269; Pfam: PF00215; InterPro: IPR013785.
 
  
 0.946
ptsH
Phosphocarrier, HPr family; COG: COG1925; Pfam: PF00381; InterPro: IPR000032.
    
 0.916
sgbU
Putative hexulose-6-phosphate isomerase; COG: COG3623; Pfam: PF01261; InterPro: IPR004560.
 
  
 0.886
FruB
Hypothetical protein; 2.7.1.-.
 
  
 0.770
hisE
phosphoribosyl-ATP diphosphatase; COG: COG0139; Pfam: PF01502,PF01503; InterPro: IPR008179; In the N-terminal section; belongs to the PRA-CH family.
   
    0.652
UlaR
Transcriptional regulator, DeoR family; COG: COG1349; Pfam: PF08220,PF00455; InterPro: IPR014036.
 
   
 0.640
araD
L-ribulose-5-phosphate 4-epimerase; COG: COG0235; Pfam: PF00596; InterPro: IPR001303.
 
  
 0.632
treP
PTS system trehalose-specific IIBC component; COG: COG1263; Pfam: PF00367,PF02378; InterPro: IPR011296.
 
  
 0.621
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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