STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pulGPrepilin-type cleavage/methylation N-terminal domain protein; Pfam: PF07963. (175 aa)    
Predicted Functional Partners:
EEX51072.1
Hypothetical protein.
  
 
 0.993
pilB
Type II/IV secretion system protein; COG: COG2804; Pfam: PF05157,PF00437; InterPro: IPR001482.
  
 
 0.926
pilC
Bacterial type II secretion system domain protein F; Pfam: PF00482; InterPro: IPR001992.
  
  
 0.922
EEX51073.1
Hypothetical protein.
       0.794
EEX51074.1
Hypothetical protein.
       0.794
rec
DNA internalization competence protein ComEC/Rec2-like protein; Pfam: PF03772,PF00753; InterPro: IPR004797.
  
  
 0.646
pilD
Peptidase, A24 family; Pfam: PF01478; InterPro: IPR000045.
  
  
 0.609
recC
Exodeoxyribonuclease V, gamma subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and r [...]
     
 0.607
topA2
comEA protein; COG: COG1555; InterPro: IPR004509.
  
  
 0.532
dprA
DNA protecting protein DprA; COG: COG0758; Pfam: PF02481; InterPro: IPR003488.
  
  
 0.494
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.