STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
afuA3ABC transporter, solute-binding protein; COG: COG1840; Pfam: PF01547. (344 aa)    
Predicted Functional Partners:
fbpB2
ABC transporter, permease protein; COG: COG1178; Pfam: PF00528; InterPro: IPR000515.
 
 
 0.982
fbpC2
ABC transporter, ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
 
  0.940
fbpB
ABC transporter, permease protein; COG: COG1178; Pfam: PF00528; InterPro: IPR000515.
  
 
  0.865
fbpC
ABC transporter, ATP-binding protein; COG: COG3842; Pfam: PF00005; InterPro: IPR003593; Belongs to the ABC transporter superfamily.
 
 
  0.847
afuA4
ABC transporter, solute-binding protein; COG: COG1840; Pfam: PF01547; InterPro: IPR006059.
 
    
0.762
afuA5
ABC transporter, solute-binding protein; COG: COG1840; Pfam: PF01547.
 
    
0.761
thiP
Thiamine/thiamine pyrophosphate ABC transporter, permease protein; COG: COG1178; Pfam: PF00528; InterPro: IPR005947.
 
    0.514
udk
Uridine kinase; COG: COG0572; Pfam: PF00485; InterPro: IPR000764.
       0.466
EEX51086.1
Hypothetical protein.
  
    0.456
dcd
dCTP deaminase; Catalyzes the deamination of dCTP to dUTP.
       0.454
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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