STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX51114.1Hypothetical protein; COG: COG2350; Pfam: PF03795; InterPro: IPR005545. (98 aa)    
Predicted Functional Partners:
yciA
Thioesterase family protein; COG: COG1607; Pfam: PF03061; InterPro: IPR006683.
       0.769
ispZ
Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
       0.769
EEX51117.1
Hypothetical protein.
       0.751
Slt
Transglycosylase SLT domain protein; COG: COG0741; Pfam: PF01464; InterPro: IPR008939.
       0.499
lptA
Lipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm.
  
     0.481
ompP
Outer membrane insertion signal domain protein; COG: COG2067; Pfam: PF03349; InterPro: IPR005017.
  
     0.476
trpR
Trp operon repressor; This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription.
       0.443
oprG
OmpW family protein; COG: COG3047; Pfam: PF03922; InterPro: IPR005618.
       0.404
hflD
Hypothetical protein; COG: COG2915; Pfam: PF04356; InterPro: IPR007451.
  
     0.403
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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