STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ispZIntracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family. (184 aa)    
Predicted Functional Partners:
yciA
Thioesterase family protein; COG: COG1607; Pfam: PF03061; InterPro: IPR006683.
       0.794
EEX51117.1
Hypothetical protein.
       0.793
EEX51114.1
Hypothetical protein; COG: COG2350; Pfam: PF03795; InterPro: IPR005545.
       0.769
Slt
Transglycosylase SLT domain protein; COG: COG0741; Pfam: PF01464; InterPro: IPR008939.
       0.489
EEX49603.1
Hypothetical protein; Pfam: PF03966; InterPro: IPR005651; 2.7.1.130; Belongs to the UPF0434 family.
  
     0.486
oprG
OmpW family protein; COG: COG3047; Pfam: PF03922; InterPro: IPR005618.
       0.456
trpR
Trp operon repressor; This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription.
       0.430
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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