STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wzsChain length determinant protein; COG: COG3206; Pfam: PF02706; InterPro: IPR003856. (699 aa)    
Predicted Functional Partners:
Wza
Polysaccharide biosynthesis/export protein; COG: COG1596; Pfam: PF02563; InterPro: IPR003715.
 
 
 0.999
pglB
Bacterial sugar transferase; COG: COG2148; Pfam: PF02397; InterPro: IPR003362.
 
  
 0.960
wzb
Low molecular weight phosphotyrosine protein phosphatase; COG: COG0394; Pfam: PF01451; InterPro: IPR000106; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
 
 0.947
pglD
Polysaccharide biosynthesis protein; COG: COG1086; Pfam: PF02719; InterPro: IPR003869.
  
  
 0.890
cap5E
Polysaccharide biosynthesis protein; COG: COG1086; Pfam: PF02719,PF08485; InterPro: IPR003869.
  
  
 0.860
cap5F
NAD dependent epimerase/dehydratase family protein; COG: COG0451; Pfam: PF01370; InterPro: IPR016040.
  
  
 0.853
pglC
DegT/DnrJ/EryC1/StrS aminotransferase family protein; COG: COG0399; Pfam: PF01041; InterPro: IPR000653; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.777
wcgV
Glycosyltransferase, group 1 family protein; COG: COG0438; Pfam: PF00534; InterPro: IPR001296.
 
  
 0.737
EEX51188.1
Glycosyltransferase, group 1 family protein; Pfam: PF00534; overlaps another CDS with the same product name.
 
  
 0.686
EEX51191.1
Polysaccharide biosynthesis protein; Pfam: PF01943.
  
  
 0.684
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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