STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xkdPLysM domain protein; COG: COG1652; Pfam: PF04972,PF01476; InterPro: IPR002482. (147 aa)    
Predicted Functional Partners:
EEX49935.1
Hypothetical protein; COG: COG3422; Pfam: PF07411; InterPro: IPR010879.
 
   0.955
pilQ
Type IV pilus secretin PilQ; COG: COG4796; Pfam: PF03958,PF00263; InterPro: IPR013355.
   
 
 0.787
YpfJ
Putative neutral zinc metallopeptidase; COG: COG2321; Pfam: PF04228; InterPro: IPR007343.
 
     0.590
comA
Putative competence protein A.
    
   0.457
ComB
Fimbrial assembly protein PilN; Pfam: PF05137.
    
   0.457
pilC
Bacterial type II secretion system domain protein F; Pfam: PF00482; InterPro: IPR001992.
    
   0.457
pilB
Type II/IV secretion system protein; COG: COG2804; Pfam: PF05157,PF00437; InterPro: IPR001482.
    
   0.457
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
       0.453
amiB
N-acetylmuramoyl-L-alanine amidase; COG: COG0860; Pfam: PF01520,PF01476; InterPro: IPR002508.
  
  
 0.434
napA2
Ferritin-like protein; COG: COG0783; Pfam: PF00210; InterPro: IPR012347; Belongs to the Dps family.
   
    0.414
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.