STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nrfDCytochrome c nitrite reductase, NrfD subunit; COG: COG3301; Pfam: PF03916; InterPro: IPR005614. (319 aa)    
Predicted Functional Partners:
nrfB
Cytochrome c nitrite reductase, pentaheme subunit.
 
  
 0.971
nrfA
Formate-dependent cytochrome c nitrite reductase, c552 subunit; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
 
  
 0.937
nrfC
Cytochrome c nitrite reductase, Fe-S protein; COG: COG0437; Pfam: PF00037.
 
  
 0.908
nrfF
Tetratricopeptide repeat protein; COG: COG4235; Pfam: PF07719; InterPro: IPR011990.
 
  
 0.742
napG
Putative ferredoxin-type protein NapF; COG: COG1145; Pfam: PF00037; InterPro: IPR004494.
 
  
 0.709
napH
Ferredoxin-type protein, NapH/MauN family; COG: COG0348; Pfam: PF00037; InterPro: IPR011886.
  
    0.680
nrfF-2
Cytochrome c nitrite reductase, accessory protein NrfF; Possible subunit of a heme lyase.
  
  
 0.630
nrfE
Cytochrome c nitrate reductase biogenesis protein NrfE; COG: COG1138; Pfam: PF01578; InterPro: IPR003568.
  
    0.628
ttrS
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Pfam: PF00512,PF02518; InterPro: IPR003594.
 
   
 0.613
dmsD
Cytoplasmic chaperone TorD; COG: COG3381; Pfam: PF06192; InterPro: IPR010395.
 
     0.594
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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