STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nrfCCytochrome c nitrite reductase, Fe-S protein; COG: COG0437; Pfam: PF00037. (226 aa)    
Predicted Functional Partners:
nrfD
Cytochrome c nitrite reductase, NrfD subunit; COG: COG3301; Pfam: PF03916; InterPro: IPR005614.
 
  
 0.908
ttrA
Molybdopterin dinucleotide binding domain protein; COG: COG0243; Pfam: PF00384,PF01568; InterPro: IPR009010; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   0.859
nrfB
Cytochrome c nitrite reductase, pentaheme subunit.
 
  
 0.839
fdnI
Formate dehydrogenase, gamma subunit; COG: COG2864; InterPro: IPR006471.
 
 
 0.758
nrfA
Formate-dependent cytochrome c nitrite reductase, c552 subunit; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
 
  
 0.717
dmsA
Anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; COG: COG0243; Pfam: PF04879,PF00384,PF01568; InterPro: IPR011888; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.709
fdnG2
Formate dehydrogenase, alpha subunit; COG: COG0243; Pfam: PF00384,PF01568; InterPro: IPR006443; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.619
fdnG
Tat pathway signal sequence domain protein; COG: COG0243; Pfam: PF04879; InterPro: IPR006963.
 
 
 0.612
nrfE
Cytochrome c nitrate reductase biogenesis protein NrfE; COG: COG1138; Pfam: PF01578; InterPro: IPR003568.
  
  
 0.591
napA
Periplasmic nitrate reductase, large subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
  
 
 0.549
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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