STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acrAAuxiliary transport protein, membrane fusion protein (MFP) family protein; COG: COG0845; Pfam: PF00529. (321 aa)    
Predicted Functional Partners:
YhhJ
ABC-2 type transporter; COG: COG0842; Pfam: PF01061; InterPro: IPR013525.
 
  
 0.958
ccmA2
ABC transporter, ATP-binding protein; COG: COG1131; Pfam: PF00005,PF01061; InterPro: IPR003439.
 
  
 0.956
ibeB
Efflux transporter, outer membrane factor lipoprotein, NodT family; Pfam: PF02321; InterPro: IPR010131; Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
 
 
 0.943
tolC
Efflux transporter, outer membrane factor lipoprotein, NodT family; COG: COG1538; Pfam: PF02321; InterPro: IPR010131.
 
 
 0.817
MacB
Efflux ABC transporter, permease protein; COG: COG0577; Pfam: PF02687; InterPro: IPR003838.
  
  
 0.783
arcB
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG0642; Pfam: PF00512,PF02518,PF00072,PF01627; InterPro: IPR003594.
  
  
 0.606
hisE
phosphoribosyl-ATP diphosphatase; COG: COG0139; Pfam: PF01502,PF01503; InterPro: IPR008179; In the N-terminal section; belongs to the PRA-CH family.
  
    0.519
rpsB
Ribosomal protein S2; COG: COG0052; Pfam: PF00318; InterPro: IPR005706; Belongs to the universal ribosomal protein uS2 family.
       0.492
acrB
RND transporter, HAE1 family; COG: COG0841; Pfam: PF00873; InterPro: IPR001036; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.482
acrA2
Efflux transporter, RND family, MFP subunit; COG: COG0845; Pfam: PF00529; InterPro: IPR006143; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.464
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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