STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AhpAPutative protein AhpA; COG: COG3726. (213 aa)    
Predicted Functional Partners:
nlpB
NlpB/DapX lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.774
EEX50749.1
Hypothetical protein; COG: COG3056; Pfam: PF03923; InterPro: IPR005619.
  
     0.774
oapA
Opacity-associated protein A; Pfam: PF08525,PF04225; InterPro: IPR007340.
  
     0.774
hold
Putative DNA polymerase III, psi subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.
  
     0.773
YcdY
Hypothetical protein; COG: COG3381.
  
     0.769
YecM
YecM protein; COG: COG3102; Pfam: PF06185; InterPro: IPR010393.
  
     0.769
tfoX
TfoX N-terminal domain protein; COG: COG3070; Pfam: PF04993,PF04994; InterPro: IPR007076.
  
     0.769
FruB
Hypothetical protein; 2.7.1.-.
  
     0.764
yfbU
YfbU domain protein; COG: COG3013; Pfam: PF03887; InterPro: IPR005587; Belongs to the UPF0304 family.
  
     0.760
ftsN
Cell division protein FtsN; Pfam: PF05036; InterPro: IPR007730.
  
     0.757
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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