STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YodBNickel-dependent hydrogenases B-type cytochrome subunit; Pfam: PF01292; InterPro: IPR011577. (177 aa)    
Predicted Functional Partners:
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
       0.554
mutY
A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs.
       0.553
mltC
Transglycosylase SLT domain protein; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division.
       0.545
EEX50753.1
Bacterial Fe(2+) trafficking; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes.
       0.545
EEX50757.1
Hypothetical protein; COG: COG3171; Pfam: PF04320; InterPro: IPR007416.
 
     0.483
trpC
Indole-3-glycerol phosphate synthase; COG: COG0134; Pfam: PF00218,PF00697; InterPro: IPR013785; Belongs to the TrpC family.
     
 0.426
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.