STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YiaLYhcH/YjgK/YiaL family protein; COG: COG2731; Pfam: PF04074; InterPro: IPR004375. (156 aa)    
Predicted Functional Partners:
dlgD
malate/L-lactate dehydrogenase; Catalyzes the reduction of 2,3-diketo-L-gulonate in the presence of NADH, to form 3-keto-L-gulonate.
 
    0.837
YiaM
TRAP transporter, DctQ-like membrane protein; COG: COG3090; Pfam: PF04290; InterPro: IPR007387; overlaps another CDS with the same product name.
     
 0.776
SiaT_2
TRAP transporter, DctM subunit; COG: COG1593; Pfam: PF06808; InterPro: IPR010656; overlaps another CDS with the same product name.
       0.775
dctP
TRAP transporter solute receptor, DctP family; COG: COG1638; Pfam: PF03480; InterPro: IPR004682.
       0.714
rbsA2
ABC transporter, ATP-binding protein; COG: COG1129; Pfam: PF00005; InterPro: IPR003439.
       0.532
yiaJ
Transcriptional regulator, IclR family, C-terminal domain protein; COG: COG1414; Pfam: PF09339,PF01614; InterPro: IPR014757.
       0.485
EEX50688.1
Hypothetical protein.
 
     0.471
rbsC4
Branched-chain amino acid ABC transporter, permease protein; COG: COG1172; Pfam: PF02653; InterPro: IPR001851; Belongs to the binding-protein-dependent transport system permease family.
       0.443
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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