STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmsCDMSO reductase, anchor subunit DmsC; COG: COG3302; Pfam: PF04976; InterPro: IPR007059. (282 aa)    
Predicted Functional Partners:
dmsA
Anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; COG: COG0243; Pfam: PF04879,PF00384,PF01568; InterPro: IPR011888; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.995
dmsB
Dimethylsulfoxide reductase, chain B; COG: COG0437; Pfam: PF00037; InterPro: IPR014297.
 
 
 0.993
dmsD
Cytoplasmic chaperone TorD; COG: COG3381; Pfam: PF06192; InterPro: IPR010395.
 
  
 0.794
napF
Ferredoxin-type protein NapF; COG: COG1145; Pfam: PF00037; InterPro: IPR004496.
       0.790
frdC
Fumarate reductase subunit C; Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane.
  
    0.593
yfbU
YfbU domain protein; COG: COG3013; Pfam: PF03887; InterPro: IPR005587; Belongs to the UPF0304 family.
  
     0.538
hyfA
4Fe-4S binding domain protein; COG: COG1142; Pfam: PF00037.
 
     0.534
tfoX
TfoX N-terminal domain protein; COG: COG3070; Pfam: PF04993,PF04994; InterPro: IPR007076.
  
     0.524
SapB_2
Mg2+ transporter-C family protein; COG: COG1285; Pfam: PF02308; InterPro: IPR003416.
       0.504
DcaA
Arylsulfatase; COG: COG2194; Pfam: PF00884; InterPro: IPR000917.
  
     0.493
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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