STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmsBDimethylsulfoxide reductase, chain B; COG: COG0437; Pfam: PF00037; InterPro: IPR014297. (205 aa)    
Predicted Functional Partners:
dmsA
Anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; COG: COG0243; Pfam: PF04879,PF00384,PF01568; InterPro: IPR011888; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 0.996
dmsC
DMSO reductase, anchor subunit DmsC; COG: COG3302; Pfam: PF04976; InterPro: IPR007059.
 
 
 0.993
napF
Ferredoxin-type protein NapF; COG: COG1145; Pfam: PF00037; InterPro: IPR004496.
  
  
 0.802
ttrA
Molybdopterin dinucleotide binding domain protein; COG: COG0243; Pfam: PF00384,PF01568; InterPro: IPR009010; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   0.793
fdnI
Formate dehydrogenase, gamma subunit; COG: COG2864; InterPro: IPR006471.
 
 
 0.753
dmsD
Cytoplasmic chaperone TorD; COG: COG3381; Pfam: PF06192; InterPro: IPR010395.
 
  
 0.644
fdnG2
Formate dehydrogenase, alpha subunit; COG: COG0243; Pfam: PF00384,PF01568; InterPro: IPR006443; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.614
torA-2
trimethylamine-N-oxide reductase TorA; COG: COG0243; Pfam: PF00384,PF01568; InterPro: IPR011887; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   0.601
napA
Periplasmic nitrate reductase, large subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
 
 
 0.596
torA
Molybdopterin guanine dinucleotide-containing S/N-oxide reductase; COG: COG0243; Pfam: PF00384,PF01568; InterPro: IPR006658; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.590
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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