STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hasRTonB-dependent heme/hemoglobin receptor family protein; Pfam: PF07715,PF00593; InterPro: IPR000531. (848 aa)    
Predicted Functional Partners:
tonB2
TonB-dependent receptor; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.829
EEX50244.1
TIGR01619 family protein; Pfam: PF05117,PF06877; InterPro: IPR006506.
  
     0.709
EEX49507.1
Ribonuclease, T2 family; COG: COG3719; Pfam: PF00445; InterPro: IPR001568; Belongs to the RNase T2 family.
  
     0.701
EEX50026.1
Hypothetical protein.
  
     0.686
TdhA
TonB-dependent siderophore receptor; Pfam: PF07715,PF00593; InterPro: IPR010105.
  
     0.661
oapA
Opacity-associated protein A; Pfam: PF08525,PF04225; InterPro: IPR007340.
  
     0.650
EEX50836.1
Hypothetical protein.
  
     0.636
VirK
Hypothetical protein; COG: COG2990; Pfam: PF04393; InterPro: IPR007488.
  
     0.602
lgtB
acto-N-neotetraose biosynthesis glycosyltransferase LgtB; COG: COG3306; Pfam: PF01755; InterPro: IPR002654.
  
     0.601
nlpB
NlpB/DapX lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.594
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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