STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SdcS_2Sodium:sulfate symporter transmembrane region; COG: COG0471; Pfam: PF00939. (315 aa)    
Predicted Functional Partners:
SdcS_3
Hypothetical protein.
     0.994
citT
TrkA C-terminal domain protein; COG: COG0471; Pfam: PF03600,PF02080; InterPro: IPR004680.
  
     0.561
rpoH
Alternative sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
       0.496
EEX49579.1
Hypothetical protein; COG: COG1914.
  
     0.486
tdt
C4-dicarboxylate transporter/malic acid transport protein; COG: COG1275; Pfam: PF03595; InterPro: IPR004695.
       0.411
EEX50586.1
Hypothetical protein; COG: COG4390.
       0.411
EEX50588.1
Peptidase, S51 family.
  
    0.408
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
       0.404
narQ
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG3850; Pfam: PF00672,PF07730,PF02518; InterPro: IPR003594.
       0.404
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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