STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnaBAromatic amino acid transport protein; COG: COG0814; Pfam: PF03222; InterPro: IPR002091. (408 aa)    
Predicted Functional Partners:
tnaA
Tryptophan 2,3-dioxygenase; COG: COG3033; Pfam: PF01212; InterPro: IPR013440; Belongs to the beta-eliminating lyase family.
 
  
 0.693
tex
ASCH domain protein; COG: COG3097; Pfam: PF06164; InterPro: IPR008314; Belongs to the UPF0267 family.
  
     0.585
EEX49394.1
Tetratricopeptide repeat protein; Pfam: PF04575; InterPro: IPR007655.
  
     0.555
YdeU_2
Outer membrane autotransporter barrel domain protein; COG: COG3468; Pfam: PF03797; InterPro: IPR006315.
  
     0.521
stp
Serine transporter; COG: COG0814; Pfam: PF01490; InterPro: IPR004694.
  
   
 0.497
rhaT2
Putative membrane protein; COG: COG0697; Pfam: PF00892; InterPro: IPR000620.
  
     0.482
rhaT3
Putative membrane protein; COG: COG0697; Pfam: PF00892; InterPro: IPR000620.
  
     0.465
menC
O-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
  
     0.436
torD2
Cytoplasmic chaperone TorD; Involved in the biogenesis of TorA. Acts on TorA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; Belongs to the TorD/DmsD family. TorD subfamily.
  
     0.424
yfbU
YfbU domain protein; COG: COG3013; Pfam: PF03887; InterPro: IPR005587; Belongs to the UPF0304 family.
  
     0.406
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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