STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX50639.1ABC transporter, ATP-binding protein; COG: COG1132; Pfam: PF00664,PF00005; InterPro: IPR003593. (552 aa)    
Predicted Functional Partners:
oppF
ABC transporter, ATP-binding protein; COG: COG4608; Pfam: PF00005,PF08352; InterPro: IPR003593.
    
0.887
CydD_2
ABC transporter, ATP-binding protein; COG: COG4988; Pfam: PF00664,PF00005; InterPro: IPR003593.
 
   
0.837
YbaN
Hypothetical protein; Pfam: PF04304; InterPro: IPR007401.
     0.680
fbpC2
ABC transporter, ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
     
0.618
rhaT
Putative membrane protein; COG: COG0697; Pfam: PF00892; InterPro: IPR000620.
   
   0.484
EEX50640.1
Raf-like protein; COG: COG1881; Pfam: PF01161; InterPro: IPR008914.
       0.467
potA
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
     
0.438
dnaK
DnaK family protein; COG: COG0443; Pfam: PF00012; InterPro: IPR013126; Belongs to the heat shock protein 70 family.
  
 0.425
FtsH_2
ATPase, AAA family; COG: COG0464; Pfam: PF07726,PF00004; InterPro: IPR003959.
   
 0.420
gyrB
DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
   
 
 0.400
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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