STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cya_1Type I secretion target GGXGXDXXX repeat (2 copies); Pfam: PF00353. (377 aa)    
Predicted Functional Partners:
EEX51396.1
Outer membrane autotransporter barrel domain protein; Pfam: PF03797; InterPro: IPR006315.
  
  
 0.766
frpC
Type I secretion target GGXGXDXXX repeat (2 copies); Pfam: PF00353.
 
  
 0.758
rec
DNA internalization competence protein ComEC/Rec2-like protein; Pfam: PF03772,PF00753; InterPro: IPR004797.
  
  
 0.606
arcB
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG0642; Pfam: PF00512,PF02518,PF00072,PF01627; InterPro: IPR003594.
  
  
 0.576
EEX49807.1
Hypothetical protein; COG: COG4671.
  
     0.546
HasR_1
TonB-dependent receptor; Pfam: PF07715,PF00593; InterPro: IPR000531.
    
 
 0.544
EEX50659.1
Hypothetical protein.
       0.539
Hsf2_2
Hep/Hag repeat protein; COG: COG5295; Pfam: PF05658,PF05662,PF03895; InterPro: IPR005594.
   
   0.506
EEX50555.1
Hypothetical protein.
  
 
 0.498
EEX49574.1
Hypothetical protein.
  
 
 0.498
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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