STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YcaCIsochorismatase family protein; COG: COG1335; Pfam: PF00857; InterPro: IPR000868. (230 aa)    
Predicted Functional Partners:
EEX50510.1
XapX domain protein; Pfam: PF07235; InterPro: IPR009872.
 
    0.934
NfdA
Amidohydrolase family protein; COG: COG1574; Pfam: PF07969; InterPro: IPR013108.
 
   
 0.933
EntS
Hypothetical protein; COG: COG0477; Pfam: PF05977; InterPro: IPR010290.
 
     0.859
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
  
   0.467
NadR
Nicotinamide-nucleotide adenylyltransferase; COG: COG3172; Pfam: PF01381; InterPro: IPR006417.
     
 0.449
glpF
MIP family channel protein; COG: COG0580; Pfam: PF00230; InterPro: IPR000425; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
    0.425
katA
Catalase; COG: COG0753; Pfam: PF00199; InterPro: IPR011614; Belongs to the catalase family.
  
   0.419
aad
Alcohol dehydrogenase, iron-dependent; COG: COG1454; Pfam: PF00465; InterPro: IPR001670; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.404
guaA
GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP.
     
 0.400
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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