STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fecEABC transporter, ATP-binding protein; COG: COG1120; Pfam: PF00005; InterPro: IPR003593. (245 aa)    
Predicted Functional Partners:
btuC
Iron chelate uptake ABC transporter, FeCT family, permease protein; COG: COG0609; Pfam: PF01032; InterPro: IPR000522; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.986
btuC2
Iron chelate uptake ABC transporter, FeCT family, permease protein; COG: COG0609; Pfam: PF01032; InterPro: IPR000522; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.948
HmuT
Periplasmic binding protein; COG: COG4558; Pfam: PF01497; InterPro: IPR002491.
 
 
 0.916
EEX50442.1
Hypothetical protein.
 
 
 0.877
PfhR
TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; Pfam: PF07715,PF00593; InterPro: IPR011276.
 
  
 0.683
HasR_1
TonB-dependent receptor; Pfam: PF07715,PF00593; InterPro: IPR000531.
  
  
 0.671
EEX50334.1
Phospholipase/carboxylesterase; Pfam: PF02230.
       0.655
cbiO
ABC transporter, ATP-binding protein; COG: COG1122; Pfam: PF00005; InterPro: IPR003593.
    
0.546
YwbL
Iron permease FTR1 family; COG: COG0672; Pfam: PF03239; InterPro: IPR004923.
   
    0.476
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
     0.450
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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