STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HmuTPeriplasmic binding protein; COG: COG4558; Pfam: PF01497; InterPro: IPR002491. (261 aa)    
Predicted Functional Partners:
btuC
Iron chelate uptake ABC transporter, FeCT family, permease protein; COG: COG0609; Pfam: PF01032; InterPro: IPR000522; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.980
btuC2
Iron chelate uptake ABC transporter, FeCT family, permease protein; COG: COG0609; Pfam: PF01032; InterPro: IPR000522; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.939
fecE
ABC transporter, ATP-binding protein; COG: COG1120; Pfam: PF00005; InterPro: IPR003593.
 
 
 0.916
PfhR
TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; Pfam: PF07715,PF00593; InterPro: IPR011276.
 
  
 0.801
EEX50334.1
Phospholipase/carboxylesterase; Pfam: PF02230.
       0.773
fepC
ABC transporter, ATP-binding protein; COG: COG1120; Pfam: PF00005; InterPro: IPR003439.
 
 
 0.612
cirA
TonB-dependent receptor plug domain protein; COG: COG4206; Pfam: PF07715,PF00593; InterPro: IPR000531.
 
     0.474
HasR_1
TonB-dependent receptor; Pfam: PF07715,PF00593; InterPro: IPR000531.
  
  
 0.451
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.