STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX50390.1Hemerythrin HHE cation binding domain protein; Pfam: PF01814. (171 aa)    
Predicted Functional Partners:
tgt
tRNA-guanine transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the [...]
       0.786
EEX50586.1
Hypothetical protein; COG: COG4390.
  
     0.764
EEX50391.1
Hypothetical protein; Pfam: PF01206; InterPro: IPR001455; Belongs to the sulfur carrier protein TusA family.
       0.733
dedA
SNARE-like domain protein; COG: COG0586; Pfam: PF09335.
  
     0.627
gcr
Site-specific recombinase family protein; COG: COG4389.
  
     0.569
EEX49947.1
Polysaccharide biosynthesis protein; COG: COG2244; Pfam: PF01943.
  
     0.500
hypB
Hydrogenase accessory protein HypB; COG: COG0378; Pfam: PF02492; InterPro: IPR004392.
       0.476
hypD
Hydrogenase expression/formation protein HypD; COG: COG0409; Pfam: PF01924; InterPro: IPR002780; Belongs to the HypD family.
       0.472
EEX49835.1
Hypothetical protein; Pfam: PF05957; InterPro: IPR010279.
  
     0.469
hypE
Hydrogenase expression/formation protein HypE; COG: COG0309; Pfam: PF00586,PF02769; InterPro: IPR011854.
       0.443
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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