STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PfhB2Filamentous hemeagglutinin family domain protein; COG: COG3210; Pfam: PF05860,PF05594; InterPro: IPR012334. (2845 aa)    
Predicted Functional Partners:
lspB
POTRA domain protein, ShlB-type; Pfam: PF08479,PF03865.
 
 
 0.939
fhaC
POTRA domain protein, ShlB-type; COG: COG2831; Pfam: PF08479; InterPro: IPR013686.
 
 
 0.813
FimC
Gram-negative pili assembly chaperone domain protein; COG: COG3121; Pfam: PF00345,PF02753; InterPro: IPR008962.
  
  
 0.513
EEX51213.1
Hypothetical protein; InterPro: IPR013831.
   
 
 0.496
HtrE
Fimbrial usher protein; COG: COG3188; Pfam: PF00577; InterPro: IPR000015.
  
  
 0.483
EEX51396.1
Outer membrane autotransporter barrel domain protein; Pfam: PF03797; InterPro: IPR006315.
  
  
 0.458
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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