Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PfhB2Filamentous hemeagglutinin family domain protein; COG: COG3210; Pfam: PF05860,PF05594; InterPro: IPR012334. (2845 aa)    
Predicted Functional Partners:
lspB
POTRA domain protein, ShlB-type; Pfam: PF08479,PF03865.
 
   0.933
fhaC
POTRA domain protein, ShlB-type; COG: COG2831; Pfam: PF08479; InterPro: IPR013686.
 
   0.797
FimC
Gram-negative pili assembly chaperone domain protein; COG: COG3121; Pfam: PF00345,PF02753; InterPro: IPR008962.
  
  
 0.518
HtrE
Fimbrial usher protein; COG: COG3188; Pfam: PF00577; InterPro: IPR000015.
  
    0.468
arcB
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG0642; Pfam: PF00512,PF02518,PF00072,PF01627; InterPro: IPR003594.
     
 0.458
EEX51213.1
Hypothetical protein; InterPro: IPR013831.
   
 
 0.451
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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