STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YncBNuclease-like protein; COG: COG1525; Pfam: PF00565; InterPro: IPR006021. (161 aa)    
Predicted Functional Partners:
sufE
Fe-S metabolism associated domain protein; COG: COG2166; Pfam: PF02657; InterPro: IPR003808.
       0.794
sufS
Cysteine desulfurase, SufS subfamily; COG: COG0520; Pfam: PF00266; InterPro: IPR000192.
     
 0.794
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.618
YohJ
LrgA family protein; COG: COG1380; Pfam: PF03788; InterPro: IPR005538.
       0.578
lrgB
TIGR00659 family protein; COG: COG1346; Pfam: PF04172; InterPro: IPR005261.
       0.578
Dgt
Putative dGTPase; COG: COG0232; InterPro: IPR006261; Belongs to the dGTPase family. Type 2 subfamily.
       0.551
uup
ABC transporter, ATP-binding protein; COG: COG0488; Pfam: PF00005; InterPro: IPR003593.
   
   0.508
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
   
 
 0.409
OatA_1
Acyltransferase; COG: COG1835; Pfam: PF01757; InterPro: IPR002656.
  
  
 0.404
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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