STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sitBABC transporter, ATP-binding protein; COG: COG1121; Pfam: PF00005; InterPro: IPR003593. (296 aa)    
Predicted Functional Partners:
sitA
ABC transporter, substrate-binding protein; COG: COG0803; Pfam: PF01297; InterPro: IPR006127; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.997
mtsC
ABC 3 transport family protein; COG: COG1108; Pfam: PF00950; InterPro: IPR001626.
 
 0.996
sitC
ABC 3 transport family protein; COG: COG1108; Pfam: PF00950; InterPro: IPR001626.
 
 0.996
znuB
ABC 3 transport family protein; COG: COG1108; Pfam: PF00950; InterPro: IPR001626.
 
 
 0.817
znuA
Putative high-affinity zinc transporter periplasmic component; COG: COG4531; Pfam: PF01297; InterPro: IPR006127.
 
  
 0.700
tusE
Sulfur relay protein, TusE/DsrC/DsvC family; COG: COG2920; Pfam: PF04358; InterPro: IPR007453.
       0.512
YccA
Hypothetical protein; COG: COG0670; Pfam: PF01027; InterPro: IPR006214; Belongs to the BI1 family.
       0.512
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.