STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MetI_1ABC transporter, substrate-binding protein, QAT family; COG: COG2113; Pfam: PF04069,PF00528; InterPro: IPR007210. (613 aa)    
Predicted Functional Partners:
proV
ABC transporter, ATP-binding protein; COG: COG4175; Pfam: PF00005; InterPro: IPR003593.
 0.999
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
  
 0.865
purM
Phosphoribosylformylglycinamidine cyclo-ligase; COG: COG0150; Pfam: PF00586,PF02769; InterPro: IPR004733.
   
    0.674
tcyB
ABC transporter, permease protein; COG: COG0765; Pfam: PF00528; InterPro: IPR000515.
  
  
 0.620
aad
Alcohol dehydrogenase, iron-dependent; COG: COG1454; Pfam: PF00465; InterPro: IPR001670; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.593
malF
ABC transporter, permease protein; COG: COG1175; Pfam: PF00528; InterPro: IPR000515.
     
 0.548
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.538
guaA
GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP.
  
    0.525
betT
Transporter, betaine/carnitine/choline family; COG: COG1292; Pfam: PF02028; InterPro: IPR000060; Belongs to the BCCT transporter (TC 2.A.15) family.
 
   
 0.491
yadH
ABC-2 type transporter; COG: COG0842; Pfam: PF01061; InterPro: IPR013525.
 
  
  0.475
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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