STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX50016.1Hypothetical protein; COG: COG3008; Pfam: PF02470; InterPro: IPR003399. (884 aa)    
Predicted Functional Partners:
pqiA
Integral membrane protein, PqiA family; COG: COG2995; Pfam: PF04403; InterPro: IPR007498.
  
 0.971
YihD
Hypothetical protein; COG: COG3084; Pfam: PF06288; InterPro: IPR009383.
  
     0.540
YcdY
Hypothetical protein; COG: COG3381.
  
     0.535
lppC
LppC; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1A (PBP1a). Belongs to the LpoA family.
  
     0.529
EEX50138.1
Hypothetical protein; COG: COG3110; Belongs to the UPF0319 family.
  
     0.527
YecM
YecM protein; COG: COG3102; Pfam: PF06185; InterPro: IPR010393.
  
     0.503
yfbU
YfbU domain protein; COG: COG3013; Pfam: PF03887; InterPro: IPR005587; Belongs to the UPF0304 family.
  
     0.500
EEX50757.1
Hypothetical protein; COG: COG3171; Pfam: PF04320; InterPro: IPR007416.
  
     0.497
malM
Maltose operon periplasmic protein precursor (MalM); Pfam: PF07148; InterPro: IPR010794.
  
     0.476
yihI
Hypothetical protein; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family.
  
     0.464
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.