STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rcpABacterial type II and III secretion system protein; COG: COG4964; Pfam: PF00263; InterPro: IPR004846; Belongs to the bacterial secretin family. (465 aa)    
Predicted Functional Partners:
cpaF
Type II/IV secretion system protein; COG: COG4962; Pfam: PF00437; InterPro: IPR001482.
  
 0.968
tadB
Bacterial type II secretion system domain protein F; Pfam: PF00482; InterPro: IPR001992.
 
  
 0.962
tadC
Bacterial type II secretion system domain protein F; Pfam: PF00482; InterPro: IPR001992.
 
  
 0.948
EEX49596.1
Hypothetical protein.
  
  
 0.944
EEX49593.1
Hypothetical protein.
  
  
 0.888
tadD
Tetratricopeptide repeat protein; Pfam: PF07719; InterPro: IPR011990.
  
  
 0.806
EEX49594.1
Hypothetical protein.
     
 0.804
tadE
TadE-like protein; Pfam: PF07811; InterPro: IPR012495.
  
  
 0.789
TadF
Hypothetical protein.
     
 0.766
EEX49597.1
Peptidase, A24 family; Pfam: PF01478; InterPro: IPR000045.
  
  
 0.725
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.