STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YgdDHypothetical protein; Pfam: PF04241; InterPro: IPR006696. (125 aa)    
Predicted Functional Partners:
hrpA
ATP-dependent helicase HrpA; COG: COG1643; Pfam: PF00271,PF04408,PF07717; InterPro: IPR010222.
       0.791
EEX49625.1
Hypothetical protein; COG: COG2707; Pfam: PF04284; InterPro: IPR007382.
       0.733
rlmL
THUMP domain protein; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.
 
   
 0.496
grxD
Monothiol glutaredoxin, Grx4 family; COG: COG0278; Pfam: PF00462; InterPro: IPR012335; Belongs to the glutaredoxin family. Monothiol subfamily.
       0.483
rlmM
Putative ribosomal RNA large subunit methyltransferase M; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily.
  
  
 0.478
EEX49628.1
Hypothetical protein; COG: COG3762; Pfam: PF04536; InterPro: IPR007621.
 
     0.441
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.