STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SpeETransporter, major facilitator family protein; Pfam: PF07690,PF01564. (712 aa)    
Predicted Functional Partners:
DcaA
Arylsulfatase; COG: COG2194; Pfam: PF00884; InterPro: IPR000917.
       0.773
EEX49640.1
Hypothetical protein.
       0.554
speB
Agmatinase; COG: COG0010; Pfam: PF00491; InterPro: IPR006035; Belongs to the arginase family.
  
  
 0.509
EEX50244.1
TIGR01619 family protein; Pfam: PF05117,PF06877; InterPro: IPR006506.
  
     0.483
EEX50836.1
Hypothetical protein.
  
     0.479
thrA
Homoserine dehydrogenase; COG: COG0527; Pfam: PF00696,PF01842,PF03447,PF00742; InterPro: IPR001341; In the C-terminal section; belongs to the homoserine dehydrogenase family.
 
  
 0.445
EEX50294.1
Hypothetical protein; COG: COG3774; Pfam: PF04488; InterPro: IPR007577.
  
     0.439
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
    0.433
argA
Amino-acid N-acetyltransferase; COG: COG0548; Pfam: PF00696,PF00583; InterPro: IPR010167; Belongs to the acetyltransferase family. ArgA subfamily.
     
 0.415
fusA
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
   
    0.400
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.