STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxBThioredoxin-disulfide reductase; COG: COG0492; Pfam: PF07992,PF00070; InterPro: IPR005982. (317 aa)    
Predicted Functional Partners:
trxA
Thioredoxin; COG: COG0526; Pfam: PF00085; InterPro: IPR012335; Belongs to the thioredoxin family.
 
 0.996
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
     
 0.913
ahpC
Antioxidant, AhpC/TSA family; COG: COG0450; Pfam: PF00578; InterPro: IPR012335.
  
 
 0.903
EEX49641.1
Thioredoxin; COG: COG3118; Pfam: PF00085; InterPro: IPR012335.
  
 
 0.866
katA
Catalase; COG: COG0753; Pfam: PF00199; InterPro: IPR011614; Belongs to the catalase family.
   
 
 0.707
moeB
Molybdopterin synthase sulfurylase MoeB; COG: COG0476; Pfam: PF00899,PF05237; InterPro: IPR016040.
  
  
 0.613
scsD
Antioxidant, AhpC/TSA family; COG: COG0526; Pfam: PF00578; InterPro: IPR012335.
  
 
 0.596
YcbX_2
MOSC domain protein; COG: COG3217; Pfam: PF03476,PF03473; InterPro: IPR005302.
   
 
 0.595
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
  
   
 0.593
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
 
 0.579
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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