STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YtfJConserved hypothetical protein YtfJ-family, TIGR01626; COG: COG3054; InterPro: IPR006513. (191 aa)    
Predicted Functional Partners:
EEX49662.1
Hypothetical protein; COG: COG3150; Pfam: PF05728; InterPro: IPR008886; Belongs to the UPF0227 family.
  
     0.738
ArfA
Hypothetical protein; COG: COG3036; Pfam: PF03889; InterPro: IPR005589.
  
     0.667
wzzE
Putative lipopolysaccharide biosynthesis protein WzzE.
  
     0.630
yfbU
YfbU domain protein; COG: COG3013; Pfam: PF03887; InterPro: IPR005587; Belongs to the UPF0304 family.
  
     0.621
YobD
Hypothetical protein; COG: COG4811; Pfam: PF06173; InterPro: IPR009328.
  
     0.567
phnA
Putative alkylphosphonate utilization operon protein PhnA; COG: COG2824; Pfam: PF08274,PF03831; InterPro: IPR004624.
       0.538
IlvM
Hypothetical protein; COG: COG3978; 2.2.1.6.
  
     0.525
EEX49916.1
Hypothetical protein; COG: COG3099; Pfam: PF04269; InterPro: IPR007376; Belongs to the UPF0263 family.
  
     0.507
EEX50317.1
Hypothetical protein; COG: COG3112; Pfam: PF06062; InterPro: IPR008249; Belongs to the UPF0231 family.
  
     0.499
pldA
Phospholipase A1; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family.
  
     0.472
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.