STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX49471.1Hypothetical protein; Pfam: PF04402; InterPro: IPR007497. (236 aa)    
Predicted Functional Partners:
EEX49730.1
Cupin family protein; COG: COG2850; Pfam: PF08007; InterPro: IPR013109.
  
    0.624
slyD
Peptidyl-prolyl cis-trans isomerase, FKBP-type; COG: COG1047; Pfam: PF00254; InterPro: IPR001179.
       0.619
rraB
Hypothetical protein; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome.
       0.513
EEX50761.1
Hypothetical protein; COG: COG0454.
  
     0.503
DsbA_1
Hypothetical protein; InterPro: IPR012335.
  
     0.478
cbiK
Nickel uptake substrate-specific transmembrane region; Metal ABC transporter, nickel uptake transporter (NiT) family, periplasmic substrate-binding protein.
  
     0.434
EEX49948.1
Hypothetical protein; COG: COG1434; Pfam: PF02698; InterPro: IPR003848.
  
     0.423
YdgA
Hypothetical protein; Pfam: PF06097; InterPro: IPR010352.
  
     0.408
EEX50244.1
TIGR01619 family protein; Pfam: PF05117,PF06877; InterPro: IPR006506.
  
     0.407
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.