STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VirKHypothetical protein; COG: COG2990; Pfam: PF04393; InterPro: IPR007488. (289 aa)    
Predicted Functional Partners:
oapA
Opacity-associated protein A; Pfam: PF08525,PF04225; InterPro: IPR007340.
  
     0.750
EEX50244.1
TIGR01619 family protein; Pfam: PF05117,PF06877; InterPro: IPR006506.
  
     0.747
nlpB
NlpB/DapX lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.746
EEX50026.1
Hypothetical protein.
  
     0.714
EEX49394.1
Tetratricopeptide repeat protein; Pfam: PF04575; InterPro: IPR007655.
  
     0.692
lgtB
acto-N-neotetraose biosynthesis glycosyltransferase LgtB; COG: COG3306; Pfam: PF01755; InterPro: IPR002654.
  
     0.690
AhpA
Putative protein AhpA; COG: COG3726.
  
     0.689
EEX49945.1
LPS glycosyltransferase; Pfam: PF01755; InterPro: IPR002654.
  
     0.688
EEX50749.1
Hypothetical protein; COG: COG3056; Pfam: PF03923; InterPro: IPR005619.
  
     0.680
EEX50071.1
Hypothetical protein.
  
     0.675
Your Current Organism:
Pasteurella dagmatis
NCBI taxonomy Id: 667128
Other names: P. dagmatis ATCC 43325, Pasteurella dagmatis ATCC 43325, Pasteurella dagmatis str. ATCC 43325, Pasteurella dagmatis strain ATCC 43325
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.