STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE98359.1Hypothetical protein; COG: COG5464; Pfam: PF04754; InterPro: IPR006842. (274 aa)    
Predicted Functional Partners:
rlgA
Helix-turn-helix domain of resolvase; COG: COG1961; Pfam: PF00239,PF02796; InterPro: IPR006119.
       0.773
EFE98356.1
Phage lysozyme; COG: COG3772; Pfam: PF00959; InterPro: IPR002196.
  
     0.571
EFE98076.1
Hypothetical protein.
  
     0.526
traN
type-F conjugative transfer system mating-pair stabilization protein TraN; Pfam: PF06986; InterPro: IPR014121.
  
     0.499
traI
Conjugative transfer relaxase protein TraI; COG: COG0507; Pfam: PF08751,PF07057; InterPro: IPR014129.
  
     0.478
traG
TraG-like protein, domain protein; Pfam: PF07916; InterPro: IPR012931.
  
     0.470
EFE93399.1
Transposase; COG: COG2963; Pfam: PF01527; InterPro: IPR002514.
  
     0.442
EFE94142.1
Diguanylate cyclase (GGDEF) domain protein; COG: COG2199; Pfam: PF00990; InterPro: IPR000160.
  
     0.439
EFE95097.1
Hypothetical protein; Pfam: PF05488.
  
     0.438
trbC
type-F conjugative transfer system pilin assembly protein TrbC; InterPro: IPR014113.
  
     0.419
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.