STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE98356.1Phage lysozyme; COG: COG3772; Pfam: PF00959; InterPro: IPR002196. (175 aa)    
Predicted Functional Partners:
EFE98355.1
Hypothetical protein.
       0.773
EFE98357.1
Hypothetical protein.
       0.773
EFE93985.1
Hypothetical protein.
 
   
 0.640
holD
DNA polymerase III subunit psi; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.
  
     0.615
EFE93986.1
Hypothetical protein.
 
     0.599
dsbA
DsbA-like protein; COG: COG0526; Pfam: PF01323; InterPro: IPR012335.
 
   
 0.576
EFE98359.1
Hypothetical protein; COG: COG5464; Pfam: PF04754; InterPro: IPR006842.
  
     0.571
EFE94006.1
Phage protein F-like protein; COG: COG2369; Pfam: PF04233.
 
    0.571
EFE93348.1
Hypothetical protein; COG: COG5464; Pfam: PF04754; InterPro: IPR010106.
  
     0.561
EFE94007.1
Putative phage-associated protein, HI1409 family.
 
     0.548
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.