STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE98354.1Hypothetical protein; COG: COG3335; Pfam: PF00665. (346 aa)    
Predicted Functional Partners:
EFE93950.1
Phage tail tape measure protein, TP901 family; COG: COG5281; InterPro: IPR010090.
  
     0.746
traI
Conjugative transfer relaxase protein TraI; COG: COG0507; Pfam: PF08751,PF07057; InterPro: IPR014129.
  
     0.647
EFE95097.1
Hypothetical protein; Pfam: PF05488.
  
     0.567
EFE93262.1
SNF2 family N-terminal domain protein; COG: COG0553; Pfam: PF00176,PF00271; InterPro: IPR000330.
 
     0.563
EFE94852.1
Hydrolase, alpha/beta domain protein; Pfam: PF00561.
  
     0.553
traC
type-IV secretion system protein TraC; InterPro: IPR014117.
  
    0.538
EFE94570.1
Hypothetical protein.
  
     0.499
traN
type-F conjugative transfer system mating-pair stabilization protein TraN; Pfam: PF06986; InterPro: IPR014121.
  
     0.491
traD
Type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128.
 
     0.472
trbC
type-F conjugative transfer system pilin assembly protein TrbC; InterPro: IPR014113.
  
     0.455
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.