STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
istBIstB-like ATP-binding protein; COG: COG1484; Pfam: PF08483,PF01695; InterPro: IPR002611. (251 aa)    
Predicted Functional Partners:
EFE98338.1
Hypothetical protein.
 
  
 0.946
EFE98337.1
Hypothetical protein; COG: COG4584.
 
  
 0.893
EFE93416.1
Integrase core domain protein; COG: COG4584; Pfam: PF02796,PF00665; InterPro: IPR001584.
 
  
 0.810
revT
Reverse transcriptase (RNA-dependent DNA polymerase); COG: COG3344; Pfam: PF00078,PF08388; InterPro: IPR000477.
  
     0.612
dnaB
Replicative DNA helicase; COG: COG0305; Pfam: PF00772,PF03796; InterPro: IPR007694.
  
 
 0.599
dnaB-2
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
 
 0.599
EFE98340.1
Hypothetical protein.
  
    0.589
EFE93245.1
Transposase, Mutator family; Required for the transposition of the insertion element.
  
    0.578
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.491
EFE98341.1
Hypothetical protein.
       0.410
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.