STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE98328.1Putative phage terminase, small subunit, P27 family. (127 aa)    
Predicted Functional Partners:
ymfN
Putative phage terminase, large subunit; COG: COG4626; Pfam: PF03354; InterPro: IPR005021.
 
    0.907
EFE98325.1
Phage portal protein, HK97 family; COG: COG4695; Pfam: PF04860; InterPro: IPR006944.
 
  
 0.862
EFE93961.1
Phage portal protein, HK97 family; COG: COG4695; Pfam: PF04860; InterPro: IPR006944.
 
  
 0.838
EFE93963.1
HNH endonuclease domain protein; Pfam: PF01844.
 
    0.830
EFE93962.1
Phage terminase, small subunit, P27 family; COG: COG4626; Pfam: PF05119,PF03354; InterPro: IPR005021.
 
    0.799
EFE98323.1
Phage major capsid protein, HK97 family; Pfam: PF05065; InterPro: IPR006444.
 
     0.677
EFE93959.1
Phage major capsid protein, HK97 family; InterPro: IPR006444.
 
     0.668
EFE93957.1
Putative phage DNA packaging protein.
 
     0.634
EFE98324.1
Phage prohead protease, HK97 family; COG: COG3740; Pfam: PF04586; InterPro: IPR006433.
 
   
 0.569
clpP-3
Endopeptidase Clp; COG: COG0740; Pfam: PF00574; InterPro: IPR001907; Belongs to the peptidase S14 family.
 
    0.547
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.