STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lycVPhage lysozyme; COG: COG3772; Pfam: PF00959; InterPro: IPR002196. (144 aa)    
Predicted Functional Partners:
EFE98329.1
Bacteriophage lysis protein; Pfam: PF03245; InterPro: IPR004929.
  
  
 0.790
EFE98331.1
Phage holin, lambda family; Pfam: PF05106; InterPro: IPR006481.
       0.773
EFE97114.1
Phage Tail Protein X; Pfam: PF05489; InterPro: IPR008861.
 
    0.625
EFE97109.1
P2 phage tail completion protein R (GpR); Pfam: PF06891; InterPro: IPR009678.
 
    0.613
gpw
Putative lysozyme; COG: COG3628; Pfam: PF04965; InterPro: IPR007048.
 
    0.607
EFE97101.1
Phage P2 GpU; COG: COG3499; Pfam: PF06995; InterPro: IPR009734.
 
    0.605
EFE97117.1
Phage major capsid protein, P2 family; Pfam: PF05125; InterPro: IPR006441.
 
    0.604
EFE97099.1
Phage tail protein E; Pfam: PF06158; InterPro: IPR009322.
 
    0.601
EFE97120.1
Phage portal protein, PBSX family; Pfam: PF04860; InterPro: IPR006944.
 
    0.584
EFE97119.1
Putative ATPase subunit of terminase (gpP-like); Pfam: PF06056,PF03237; InterPro: IPR004921.
 
    0.582
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.