Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFE98329.1 | EFE98331.1 | HMPREF0758_0043 | HMPREF0758_0045 | Bacteriophage lysis protein; Pfam: PF03245; InterPro: IPR004929. | Phage holin, lambda family; Pfam: PF05106; InterPro: IPR006481. | 0.809 |
EFE98329.1 | lycV | HMPREF0758_0043 | HMPREF0758_0044 | Bacteriophage lysis protein; Pfam: PF03245; InterPro: IPR004929. | Phage lysozyme; COG: COG3772; Pfam: PF00959; InterPro: IPR002196. | 0.790 |
EFE98331.1 | EFE98329.1 | HMPREF0758_0045 | HMPREF0758_0043 | Phage holin, lambda family; Pfam: PF05106; InterPro: IPR006481. | Bacteriophage lysis protein; Pfam: PF03245; InterPro: IPR004929. | 0.809 |
EFE98331.1 | lycV | HMPREF0758_0045 | HMPREF0758_0044 | Phage holin, lambda family; Pfam: PF05106; InterPro: IPR006481. | Phage lysozyme; COG: COG3772; Pfam: PF00959; InterPro: IPR002196. | 0.773 |
lycV | EFE98329.1 | HMPREF0758_0044 | HMPREF0758_0043 | Phage lysozyme; COG: COG3772; Pfam: PF00959; InterPro: IPR002196. | Bacteriophage lysis protein; Pfam: PF03245; InterPro: IPR004929. | 0.790 |
lycV | EFE98331.1 | HMPREF0758_0044 | HMPREF0758_0045 | Phage lysozyme; COG: COG3772; Pfam: PF00959; InterPro: IPR002196. | Phage holin, lambda family; Pfam: PF05106; InterPro: IPR006481. | 0.773 |