STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE98262.1DNA-binding helix-turn-helix protein; COG: COG2932; Pfam: PF01381,PF00717; InterPro: IPR001387. (228 aa)    
Predicted Functional Partners:
EFE98255.1
MT-A70; Pfam: PF05063; InterPro: IPR007757; Belongs to the MT-A70-like family.
 
    0.587
pspB
Outer membrane autotransporter barrel domain protein; COG: COG4625; Pfam: PF00082,PF03797; InterPro: IPR006315.
  
     0.580
EFE98261.1
Hypothetical protein.
  
  
 0.566
EFE93631.1
Hypothetical protein.
  
     0.558
EFE93949.1
Phage minor tail protein; COG: COG4718; Pfam: PF05939; InterPro: IPR010265.
  
    0.536
EFE96615.1
Bacteriophage lambda tail assembly protein I; COG: COG4723; Pfam: PF06805; InterPro: IPR010654.
  
    0.535
TyrP_1
Transmembrane amino acid transporter protein; COG: COG0814; Pfam: PF01490.
  
     0.534
EFE93946.1
Bacteriophage lambda tail assembly protein I; COG: COG4723; Pfam: PF06805; InterPro: IPR010654.
  
    0.534
EFE98263.1
Hypothetical protein.
  
     0.529
EFE96611.1
Phage minor tail protein; COG: COG4718; Pfam: PF05939; InterPro: IPR010265.
  
    0.507
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.