STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE98263.1Hypothetical protein. (293 aa)    
Predicted Functional Partners:
sun
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.766
pspB
Outer membrane autotransporter barrel domain protein; COG: COG4625; Pfam: PF00082,PF03797; InterPro: IPR006315.
 
     0.764
EFE98251.1
Hypothetical protein; COG: COG2378; Pfam: PF00392.
 
     0.717
TyrP_1
Transmembrane amino acid transporter protein; COG: COG0814; Pfam: PF01490.
  
     0.710
nifJ
Pyruvate synthase; COG: COG0674; Pfam: PF01855,PF01558,PF00037,PF02775; InterPro: IPR011895.
   
   0.690
EFE95254.1
Hypothetical protein; Pfam: PF07676; overlaps another CDS with the same product name; 4.2.2.6.
 
    0.683
EFE98306.1
Hypothetical protein.
  
     0.568
fimA
Fimbrial protein; COG: COG3539; Pfam: PF00419; InterPro: IPR014779.
  
     0.542
apeE
Outer membrane autotransporter barrel domain protein; Pfam: PF00657,PF03797; InterPro: IPR001087.
  
     0.540
EFE98262.1
DNA-binding helix-turn-helix protein; COG: COG2932; Pfam: PF01381,PF00717; InterPro: IPR001387.
  
     0.529
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.